Recent Publications

2022

  1. Singh, Surendra Vikram; Dilip, Haritha; Meka, Jaya K.; Thiruvenkatam, Vijay; Jayaram, Vishakantaiah; Muruganantham, Mariyappan; Sivaprahasam, Vijayan; Rajasekhar, Balabhadrapatruni N.; Bhardwaj, Anil; Mason, Nigel J.; Burchell, Mark J. and Sivaraman, Bhalamurugan, “New signatures of bio-molecular complexity in the hypervelocity impact ejecta of icy moon analogues”, Life, vol. 12, no. 4, Mar. 2022 , DOI: 10.3390/life12040508,

  2. Dilip, Haritha; Purushothaman, Gayathri; Sharma, Gaurav; Menon, Aishwarya; Thiruvenkatam, Vijay and Kirubakaran, Sivapriya, “Mutants of helicobacter pylori IMPDH: kinetics and in silico studies to determine the structural and functional role of key amino acids”, Chemistry: An Asian Journal, DOI: 10.1002/asia.202200125, Mar. 2022.

  3. Ingle, Jaypalsing; Dedaniya, Hiren; Mayya, Chaithra; Mondal, Anirban; Bhatia, Dhiraj and Basu, Sudipta, “γ-Resorcyclic acid-based AIEgens for illuminating endoplasmic reticulum”, Chemistry: A European Journal, DOI: 10.1002/chem.202200203, Mar. 2022.

  4. Self-assembled DNA nanostructures promote cell migration & differentiation of human umbilical vein endothelial cells, Anjali Rajwar Gada, Payal Vaswani, Dhiraj Bhatia, doi: https://doi.org/10.1101/2022.01.28.478149.

  5. Vivek-Ananth, R. P., Sahoo, A. K., Srivastava, A., & Samal, A. (2022). Virtual screening of phytochemicals from Indian medicinal plants against the endonuclease domain of SFTS virus L polymerase. RSC Advances, 12(10), 6234–6247. (February) https://doi.org/10.1039/D1RA06702H  

  6. Sadaphal, D. P., Kumar, A., & Mutha, P. K. (2022). "Sensorimotor learning in response to errors in task performance." Eneuro, ENEURO.0371-21.2022. (February) https://doi.org/10.1523/ENEURO.0371-21.2022

  7. Hussain, J., Sahrawat, P., Dubey, P., Kirubakaran, S., & Thiruvenkatam, V. (2022). “Exploring packing features of N-substituted acridone derivatives: Synthesis and X-ray crystallography studies." Journal of Molecular Structure, 1248, 131448. (January)  https://doi.org/10.1016/j.molstruc.2021.131448.

  8. Datta, S., Patel, M., Kashyap, S., Patel, D., & Singh, U. (2022). "Chimeric chromosome landscapes of human somatic cell cultures show dependence on stress and regulation of genomic repeats by CGGBP1." Oncotarget, 13(1), 136–155. (January) https://doi.org/10.18632/oncotarget.28174 

  9. Singh, U., Teja, A. G., Walia, S., Vaswani, P., Dalvi, S., & Bhatia, D. (2022). "Water stable, red-emitting, carbon nanoparticles stimulate 3D cell invasion via clathrin-mediated endocytic uptake." Nanoscale Advances. (January) https://doi.org/10.1039/D1NA00813G 

  10. Bajpai, A., Desai, N. N., Pandey, S., Shukla, C., Datta, B., & Basu, S. (2022). "Chimeric nanoparticles for targeting mitochondria in cancer cells." Nanoscale Advances, 4(4), 1112–1118. (January) https://doi.org/10.1039/D1NA00644D

2021

  1. M, Maqbool, Gadhavi J, Hivare P, Gupta S, and Hoda N. 2020. “Diphenyl Triazine Hybrids Inhibit α-Synuclein Fibrillogenesis: Design, Synthesis and in Vitro Efficacy Studies.” European Journal of Medicinal Chemistry 207 (December). https://doi.org/10.1016/J.EJMECH.2020.112705

  2. Roy, Jayishnu; Pandey, Vijayalakshmi; Gupta, Iti and Shekhar, Himanshu, “Antibacterial sonodynamic therapy: current status and future perspectives”, ACS Biomaterials Science & Engineering, Oct. 2021. https://doi.org/10.1021/acsbiomaterials.1c00587 

  3. ​Naskar, Supriyo; Bhatia, Dhiraj; Lin, Shiang-Tai and Maiti, Prabal K., “A minimal coarse-grained model to study the gelation of multi-armed DNA nanostars”, arXiv, Cornell University Library, Oct. 2021, DOI: https://arxiv.org/abs/2110.11251v1 

  4. Marapureddy, Sai Geetha, Pravin Hivare, Aarushi Sharma, Juhi Chakraborty, Sourabh Ghosh, Sharad Gupta, and Prachi Thareja. 2021. “Rheology and Direct Write Printing of Chitosan - Graphene Oxide Nanocomposite Hydrogels for Differentiation of Neuroblastoma Cells.” Carbohydrate Polymers 269 (October): 118254. https://doi.org/10.1016/J.CARBPOL.2021.118254

  5. Parwani, Kirti; Patel, Farhin; Bhagwat, Pranav; Dilip, Haritha; Patel, Dhara; Thiruvenkatam, Vijay and Mandal, Palash, “Swertiamarin mitigates nephropathy in high-fat diet/streptozotocin-induced diabetic rats by inhibiting the formation of advanced glycation end products”, Archives of Physiology and Biochemistry, Oct. 2021. https://doi.org/10.1080/13813455.2021.1987478 

  6. SG, Marapureddy, Hivare P, Sharma A, Chakraborty J, Ghosh S, Gupta S, and Thareja P. 2021. “Rheology and Direct Write Printing of Chitosan - Graphene Oxide Nanocomposite Hydrogels for Differentiation of Neuroblastoma Cells.” Carbohydrate Polymers 269 (October). https://doi.org/10.1016/J.CARBPOL.2021.118254

  7. Mukherjee, Tarushyam; Kanvah, Sriram; Klymchenko; Andrey S. and Collot, Mayeul, “Probing variations of reduction activity at the plasma membrane using a targeted ratiometric FRET probe", ACS Applied Materials & Interfaces, vol. 13, no. 34, pp. 40315-40324, Sep. 2021. https://doi.org/10.1021/acsami.1c11069 

  8. Gangrade, Ankit; Stephanopoulos, Nicholas and Bhatia, Dhiraj, “Programmable, self-assembled DNA nanodevices for cellular programming and tissue engineering”, Nanoscale, vol. 13, no. 40, pp. 16834-16846, Sep. 2021. https://doi.org/10.1039/D1NR04475C 

  9. Patel, Divyesh; Patel, Manthan; Datta, Subhamoy and Singh, Umashankar, “CGGBP1-dependent CTCF-binding sites restrict ectopic transcription”, Cell Cycle, Sep. 2021. https://doi.org/10.1080/15384101.2021.1982508 

  10. Gadhavi, Joshna; Patel, Mohini; Bhatia, Dhiraj and Gupta, Sharad, “Neurotoxic or neuroprotective: post-translational modifications of α-synuclein at the cross-roads of functions”, Biochimie, Sep. 2021. https://doi.org/10.1016/j.biochi.2021.09.012 

  11. Mukherjee, Tarushyam; Regar, Ramprasad; Soppina, Virupakshi and Kanvah, Sriram, “Stress-responsive rhodamine bioconjugates for membrane-potential-independent mitochondrial live-cell imaging and tracking”, Organic & Biomolecular Chemistry, Sep. 2021. DOI: 10.1039/d1ob01741a

  12. Hussain, Javeena; Sahrawat, Parul; Dubey, Pankaj; Kirubakaran, Sivapriya and Thiruvenkatam, Vijay, “Exploring packing features of N-substituted acridone derivatives: synthesis and X-ray crystallography studies”, Journal of Molecular Structure, Sep. 2021. https://doi.org/10.1016/j.molstruc.2021.131448 

  13. Bansal, Kahkashan; Jha, Chandan Kumar; Bhatia, Dhiraj and Shekhar, Himanshu, “Ultrasound-enabled therapeutic delivery and regenerative medicine: physical and biological perspectives”, ACS Biomaterials Science & Engineering, Aug. 2021. https://doi.org/10.1021/acsbiomaterials.1c00276 

  14. Palaniyappan Nagarasu, Anu Kundu, Vijay Thiruvenkatam, Pallepogu Raghavaiah, Savarimuthu Philip Anthony, and Vedichi Madhu. 2021. “Investigating the Structure–Fluorescence Properties of Tetraphenylethylene Fused Imidazole AIEgens: Reversible Mechanofluorochromism and Polymer Matrix Controlled Fluorescence Tuning.” CrystEngComm 23 (31) (August): 5403–10. https://doi.org/10.1039/d1ce00561h

  15. Rashmi, Richa; Nandi, Chandan and Majumdar, Sharmistha, “Evolutionarily conserved regions of THAP9 transposase reveal new motifs for subcellular localization and post-translational modification”, BioRxiv, Cold Spring Harbor Laboratory, Aug. 2021. https://doi.org/10.1101/2021.08.01.454642 

  16. Bisht, Sapna R.; Mishra, Pratibha; Yadav, Deep; Rawal, Rakesh and Mercado-Shekhar, Karla P., “Current and emerging techniques for oral cancer screening and diagnosis: a review”, Progress in Biomedical Engineering, Aug. 2021. https://doi.org/10.1088/2516-1091/ac1f6c 

  17. Ratrey, Poonam; Mahapatra, Amarjyoti Das; Pandit, Shiny; Hadianawala, Murtuza; Majhi, Sasmita; Mishra, Abhijit and Datta, Bhaskar, “Emergent antibacterial activity of N -(thiazol-2-yl)benzenesulfonamides in conjunction with cell-penetrating octaarginine”, RSC Advances, vol. 11, no. 46, pp. 28581-28592, Aug. 2021. DOI: 10.1039/d1ra03882f

  18. Surendra, V. S., V. Jayaram, M. Muruganantham, T. Vijay, S. Vijayan, P. Samarth, H. Hill, Anil Bhardwaj, N. J. Mason, and B. Sivaraman. 2021a. “Complex Structures Synthesized in Shock Processing of Nucleobases – Implications to the Origins of Life.” International Journal of Astrobiology 20 (4) (August) : 285–93. ​​https://doi.org/10.1017/S1473550421000136

  19. Rashmi, Richa, Chandan Nandi, and Sharmistha Majumdar. 2021a. “Evolutionarily Conserved Regions of THAP9 Transposase Reveal New Motifs for Subcellular Localization and Post-Translational Modification.” BioRxiv, August, 2021.08.01.454642. https://doi.org/10.1101/2021.08.01.454642

  20. Singh, Udisha, Vinod Morya, Bhaskar Datta, Chinmay Ghoroi, and Dhiraj Bhatia. 2021. “Stimuli Responsive, Programmable DNA Nanodevices for Biomedical Applications.” Frontiers in Chemistry 0 (June): 514. https://doi.org/10.3389/FCHEM.2021.704234

  21. C, Panda, Voelz C, Habib P, Mevissen C, Pufe T, Beyer C, Gupta S, and Slowik A. 2021. “Aggregated Tau-PHF6 (VQIVYK) Potentiates NLRP3 Inflammasome Expression and Autophagy in Human Microglial Cells.” Cells 10 (7) (June). https://doi.org/10.3390/cells10071652

  22. Panda, Chinmaya, Clara Voelz, Pardes Habib, Christian Mevissen, Thomas Pufe, Cordian Beyer, Sharad Gupta, and Alexander Slowik. 2021. “Aggregated Tau-PHF6 (VQIVYK) Potentiates NLRP3 Inflammasome Expression and Autophagy in Human Microglial Cells.” Cells 2021, Vol. 10, Page 1652 10 (7) (June): 1652. https://doi.org/10.3390/cells10071652

  23. Miller, Simon, Ashutosh Srivastava, Yoshiko Nagai, Yoshiki Aikawa, Florence Tama, and Tsuyoshi Hirota. 2021. “Structural Differences in the FAD-Binding Pockets and Lid Loops of Mammalian CRY1 and CRY2 for Isoform-Selective Regulation.” Proceedings of the National Academy of Sciences 118 (26): June 2021. https://doi.org/10.1073/pnas.2026191118

  24. Walia, Shanka, Arun Richard Chandrasekaran, Banani Chakraborty, and Dhiraj Bhatia. 2021a. “Aptamer-Programmed DNA Nanodevices for Advanced, Targeted Cancer Theranostics.” ACS Applied Bio Materials 2021(June): 5392–5404. https://doi.org/10.1021/acsabm.1c00413

  25. Gediya, Piyush, Vivek K. Vyas, Vincenzo Carafa, Nikum Sitwala, Laura Della Torre, Angelita Poziello, Takashi Kurohara, et al. 2021. “Discovery of Novel Tetrahydrobenzo[b]Thiophene-3-Carbonitriles as Histone Deacetylase Inhibitors.” Bioorganic Chemistry 110 (May): 104801. https://doi.org/10.1016/J.BIOORG.2021.104801

  26. P, Gediya, Vyas VK, Carafa V, Sitwala N, Della Torre L, Poziello A, Kurohara T, et al. 2021. “Discovery of Novel Tetrahydrobenzo[b]Thiophene-3-Carbonitriles as Histone Deacetylase Inhibitors.” Bioorganic Chemistry 110 (May). https://doi.org/10.1016/J.BIOORG.2021.104801

  27. Sanghavi, Hiral M. Majumdar, Sharmistha. 2021c. “Oligomerization of THAP9 Transposase via Amino-Terminal Domains.” Biochemistry 60 (23) (May): 1822–35. https://doi.org/10.1021/acs.biochem.1c00010

  28. Sharma, Vasudha, Prachi Thakore, and Sharmistha Majumdar. 2021. “THAP9 Transposase Cleaves DNA via Conserved Acidic Residues in an RNaseH-Like Domain.” Cells 2021, Vol. 10, Page 1351 10 (6) (May): 1351. https://doi.org/10.3390/cells10061351

  29. Al-Wahaibi, Lamya H., Althaf Shaik, Mohammed A. Elmorsy, Mohammed S. M. Abdelbaky, Santiago Garcia-Granda, Subbiah Thamotharan, Vijay Thiruvenkatam, and Ali A. El-Emam. 2021. “Structural Insights of Three 2,4-Disubstituted Dihydropyrimidine-5-Carbonitriles as Potential Dihydrofolate Reductase Inhibitors.” Molecules 2021, Vol. 26, Page 3286 26 (11) (May): 3286. https://doi.org/10.3390/molecules26113286

  30. Marapureddy, Sai Geetha, Pravin Hivare, Siddhant Kumar, Sharad Gupta, and Prachi Thareja. 2021. “Carbamoylated Chitosan Hydrogels with Improved Viscoelastic Properties and Stability for Potential 3D Cell Culture Applications.” Biomedical Materials 16 (4) (May): 045019. https://doi.org/10.1088/1748-605x/abf88c. 

  31. Patel, Divyesh, Manthan Patel, Subhamoy Datta, and Umashankar Singh. 2021a. “CGGBP1-Dependent CTCF-Binding Sites Restrict Ectopic Transcription.” BioRxiv, April, 2020.11.09.375782. https://doi.org/10.1101/2020.11.09.375782. 

  32. Ravi, Srimadhavi, Bhanu Priya, Pankaj Dubey, Vijay Thiruvenkatam, and Sivapriya Kirubakaran. 2021. “Molecular Docking and Molecular Dynamics Simulation Studies of Quinoline-3-Carboxamide Derivatives with DDR Kinases–Selectivity Studies towards ATM Kinase.” Chemistry 2021, Vol. 3, Pages 511-524 3 (2) (April): 511–24. https://doi.org/10.3390/chemistry3020036 

  33. Koshti, Bharti, Ramesh Singh, Vivekshinh Kshtriya, Shanka Walia, Dhiraj Bhatia, Khashti Ballabh Joshi, and Nidhi Gour. 2021. “Unusual Aggregation Properties of Single Amino Acid L-Lysine Hydrochloride.” Biological and Medicinal Chemistry (March): 1–3. https://doi.org/10.26434/CHEMRXIV.14152976.V1

  34. Kshtriya, Vivekshinh, Bharti Koshti, Ashadul Haque, Ankit Gangrade, Singh Ramesh, khashti Ballabh Joshi, Sujoy Bandyopadhyay, Dhiraj Bhatia, and Nidhi Gour. 2021. “Sunflower-like Fluorescent Self-Assembled Morphologies Formed by Pyridothiazole Based Aggregation Induced Emission (AIE) Dye and Its Cell Imaging Applications,” Biological and Medicinal Chemistry  (March). https://doi.org/10.26434/CHEMRXIV.14114210.V1

  35. Kshtriya, Vivekshinh, Bharti Koshti, Ashadul Haque, Ankit Gangrade, Ramesh Singh, Khashti Ballabh Joshi, Sujoy Bandyopadhyay, Dhiraj Bhatia, and Nidhi Gour. 2021. “Self-Assembly and Photophysical Studies of an Unusual Red Colored Dye Which Show Green Fluorescence in Cell Imaging,” Biological and Medicinal Chemistry March. https://doi.org/10.26434/CHEMRXIV.14135624.V1

  36. Hivare, Pravin, Anjali Rajwar, Sharad Gupta, and Dhiraj Bhatia. 2021. “Spatiotemporal Dynamics of Endocytic Pathways Adapted by Small DNA Nanocages in Model Neuroblastoma Cell-Derived Differentiated Neurons.” ACS Applied Bio Materials 4 (4) (March): 3350–59. https://doi.org/10.1021/acsabm.0c01668 

  37. P, Sharma, Kumar S, Patel A, Datta B, and DeLong RK. 2021. “Nanomaterials for Agricultural and Ecological Defense Applications: Active Agents and Sensors.” Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology 13 (5) (March). https://doi.org/10.1002/wnan.1713

  38. N, Desai, Shah V, and Datta B. 2021. “Assessing G4-Binding Ligands In Vitro and in Cellulo Using Dimeric Carbocyanine Dye Displacement Assay.” Molecules (Basel, Switzerland) 26 (5) (March). https://doi.org/10.3390/molecules26051400

  39. Sanghavi, Hiral M., and Sharmistha Majumdar. 2021a. “Synapomorphic Variations in the THAP Domains of the Human THAP Protein Family and Its Homologs.” BioRxiv, February, 2021.02.01.429122. https://doi.org/10.1101/2021.02.01.429122 

  40. Sharma, Vasudha, Prachi Thakore, Meena Krishnan, and Sharmistha Majumdar. 2021. “Stress Induced Differential Expression of THAP9 & THAP9-AS1 in the S-Phase of Cell Cycle.” BioRxiv, February, 2021.02.11.430738. https://doi.org/10.1101/2021.02.11.430738 

  41. Kleven, Robert T., Kunal B. Karani, Nicole Hilvert, Samantha M. Ford, Karla P. Mercado-Shekhar, John M. Racadio, Marepalli B. Rao, Todd A. Abruzzo, and Christy K. Holland. 2021. “Accelerated Sonothrombolysis with Definity in a Xenographic Porcine Cerebral Thromboembolism Model.” Scientific Reports (February) 2021 11:1 11 (1): 1–11. https://doi.org/10.1038/s41598-021-83442-3

  42. Kshtriya, Vivekshinh, Bharti Koshti, Deepak K. Pandey, Sumit Kharbanda, Chandra Kanth P, Dheeraj K. Singh, Dhiraj Bhatia, and Nidhi Gour. 2021. “Sequential and Cellular Detection of Copper and Lactic Acid by Disaggregation and Reaggregation of the Fluorescent Panchromatic Fibres of an Acylthiourea Based Sensor.” Soft Matter 17 (16) (February): 4304–16. https://doi.org/10.1039/D1SM00038A

  43. Shaik, Althaf, Parimaladevi Palaniswamy, and Vijay Thiruvenkatam. 2021. “Investigating Structural Aspects of Pyridopyrimidinone Derivatives, an Important Precursor in Medicinal Chemistry.” Journal of Molecular Structure 1224 (January): 129040. https://doi.org/10.1016/j.molstruc.2020.129040

  44. Shaik, Althaf, Parimaladevi Palaniswamy, Vijay Thiruvenkatam, Althaf Shaik, Parimaladevi Palaniswamy, and Vijay Thiruvenkatam. 2021. “Investigating Structural Aspects of Pyridopyrimidinone Derivatives, an Important Precursor in Medicinal Chemistry.” JMoSt 1224 (January): 129040. https://doi.org/10.1016/j.molstruc.2020.129040

  45. Hivare, Pravin, Chinmaya Panda, Sharad Gupta, and Dhiraj Bhatia. 2021. “Programmable DNA Nanodevices for Applications in Neuroscience.” ACS Chemical Neuroscience 12 (3) (January): 363–77. https://doi.org/10.1021/acschemneuro.0c00723

  46. Mudasir Maqbool, Joshna Gadhavi, Anju Singh, Pravin Hivare, Sharad Gupta, and Nasimul Hoda. 2021. “Unravelling the Potency of Triazole Analogues for Inhibiting α-Synuclein Fibrillogenesis and in Vitro Disaggregation.” Organic & Biomolecular Chemistry 19 (7) (January): 1589–1603. https://doi.org/10.1039/D0OB02226H 

 

2020​ 

  1. A, Das Mahapatra, Queen A, Yousuf M, Khan P, Hussain A, Rehman MT, Alajmi MF, Datta B, and Hassan MI. 2020. “Design and Development of 5-(4H)-Oxazolones as Potential Inhibitors of Human Carbonic Anhydrase VA: Towards Therapeutic Management of Diabetes and Obesity.” Journal of Biomolecular Structure & Dynamics. https://doi.org/10.1080/07391102.2020.1845803

  2. A, Rajwar, Morya V, Kharbanda S, and Bhatia D. 2020. “DNA Nanodevices to Probe and Program Membrane Organization, Dynamics, and Applications.” The Journal of Membrane Biology 253 (6): 577–87. https://doi.org/10.1007/S00232-020-00154-X

  3. Bhatia, Dhiraj, Christian Wunder, and Ludger Johannes. 2021. “Self-Assembled, Programmable DNA Nanodevices for Biological and Biomedical Applications.” ChemBioChem 22 (5): 763–78. https://doi.org/10.1002/CBIC.202000372

  4. D, Angira, Shaik A, and Thiruvenkatam V. 2020. “Structural and Strategic Landscape of PIKK Protein Family and Their Inhibitors: An Overview.” Frontiers in Bioscience (Landmark Edition) 25 (8): 1538–67. https://doi.org/10.2741/4867

  5. D, Angira, Natarajan N, Dedania SR, Patel DH, and Thiruvenkatam V. 2020. “Characterization of P. Aeruginosa Glucose 6- Phosphate Isomerase: A Functional Insight via In-Vitro Activity Study.” Current Topics in Medicinal Chemistry 20 (29): 2651–61. https://doi.org/10.2174/1568026620666200820153751

  6. G, Yadav, and Mutha PK. 2020. “Symmetric Interlimb Transfer of Newly Acquired Skilled Movements.” Journal of Neurophysiology 124 (5): 1364–76. https://doi.org/10.1152/JN.00777.2019

  7. Hussain, Javeena, Deekshi Angira, Tanya Hans, Pankaj Dubey, Sivapriya Kirubakaran, and Vijay Thiruvenkatam. 2020. “Synthesis and Characterization of a New Class of Phenothiazine Molecules with 10H-Substituted Morpholine & Piperidine Derivatives: A Structural Insight.” Journal of Molecular Structure 1219 (November). https://doi.org/10.1016/J.MOLSTRUC.2020.128546

  8. Jana, Palash, Aravintha Siva, Virupakshi Soppina, and Sriram Kanvah. 2020. “Live-Cell Imaging of Lipid Droplets Using Solvatochromic Coumarin Derivatives.” Organic & Biomolecular Chemistry 18 (29): 5608–16. https://doi.org/10.1039/D0OB01277G

  9. Kshtriya, Vivekshinh, Bharti Koshti, Ankit Gangrade, Ashadul Haque, Ramesh Singh, Khashti B Joshi, Dhiraj Devidas Bhatia, and Nidhi Gour. 2021. “Self-Assembly of a Benzothiazolone Conjugate to Panchromatic Fluorescent Fibres and Its Application in Cellular Imaging.” New Journal of Chemistry. https://doi.org/10.1039/D1NJ03269K

  10. M, Maqbool, Gadhavi J, Hivare P, Gupta S, and Hoda N. 2020. “Diphenyl Triazine Hybrids Inhibit α-Synuclein Fibrillogenesis: Design, Synthesis and in Vitro Efficacy Studies.” European Journal of Medicinal Chemistry 207 (December). https://doi.org/10.1016/J.EJMECH.2020.112705

  11. Mahapatra, Amarjyoti Das, Rinku Choubey, and Bhaskar Datta. 2020. “Small Molecule Soluble Epoxide Hydrolase Inhibitors in Multitarget and Combination Therapies for Inflammation and Cancer.” Molecules 2020, Vol. 25, Page 5488 25 (23): 5488. https://doi.org/10.3390/MOLECULES25235488

  12. Manthan Patel, Divyesh Patel, Subhamoy Datta, Umashankar Singh. 2020. “HDAC Inhibitor Givinostat Targets DNA-Binding of Human CGGBP1,” January. https://doi.org/10.21203/RS.2.21430/V2

  13. Morya, Vinod, Shanka Walia, Biman B Mandal, Chinmay Ghoroi, and Dhiraj Bhatia. 2020. “Functional DNA Based Hydrogels: Development, Properties and Biological Applications.” ACS Biomaterials Science & Engineering 6 (11): 6021–35. https://doi.org/10.1021/ACSBIOMATERIALS.0C01125

  14. Mudasir Maqbool , Joshna Gadhavi b, Pravin Hivare , Sharad Gupta, Nasimul Hoda. 2020. “Diphenyl Triazine Hybrids Inhibit α-Synuclein Fibrillogenesis: Design, Synthesis and in Vitro Efficacy Studies.” European Journal of Medicinal Chemistry 207 (December). https://doi.org/10.1016/J.EJMECH.2020.112705

  15. Nalini Natarajan, Althaf Shaik, and Vijay Thiruvenkatam. 2020. “Recombinant Tumor Suppressor TSC1 Differentially Interacts with Escherichia Coli DnaK and Human HSP70.” ACS Omega 5 (30): 19131–39. https://doi.org/10.1021/ACSOMEGA.0C02480

  16. Natarajan, Nalini, and Vijay Thiruvenkatam. 2020. “An Insight of Scientific Developments in TSC for Better Therapeutic Strategy.” Current Topics in Medicinal Chemistry 20 (23): 2080–93. https://doi.org/10.2174/1568026620666200825170355

  17. Oza, Anushka, Adarsh Kumar, and Pratik K. Mutha. 2020. “Task Errors Do Not Induce Implicit Sensorimotor Learning.” BioRxiv, November, 2020.11.13.381285. https://doi.org/10.1101/2020.11.13.381285

  18. Patel, Manthan, Divyesh Patel, Subhamoy Datta, and Umashankar Singh. 2020. “An Immunochemistry-Based Screen for Chemical Inhibitors of DNA-Protein Interactions and Its Application to Human CGGBP1.” BMC Cancer 2020 20:1 20 (1): 1–14. https://doi.org/10.1186/S12885-020-07526-5

  19. Rajwar, Anjali, Sumit Kharbanda, Arun Richard Chandrasekaran, Sharad Gupta, and Dhiraj Bhatia. 2020. “Designer, Programmable 3D DNA Nanodevices to Probe Biological Systems.” ACS Applied Bio Materials 3 (11): 7265–77. https://doi.org/10.1021/ACSABM.0C00916

  20. Roy, Sonam, Amarjyoti Das Mahapatra, Taj Mohammad, Preeti Gupta, Mohamed F. Alajmi, Afzal Hussain, Md. Tabish Rehman, Bhaskar Datta, and Md. Imtaiyaz Hassan. 2020. “Design and Development of Novel Urea, Sulfonyltriurea, and Sulfonamide Derivatives as Potential Inhibitors of Sphingosine Kinase 1.” Pharmaceuticals 2020, Vol. 13, Page 118 13 (6): 118. https://doi.org/10.3390/PH13060118

  21. Sanghavi, Hiral M., and Sharmistha Majumdar. 2020. “Oligomerisation of THAP9 Transposase: Role of DNA and Amino-Terminal Domains.” BioRxiv, October, 2020.10.06.328815. https://doi.org/10.1101/2020.10.06.328815

  22. Sathisaran, Indumathi, Dhiraj Devidas Bhatia, and Sameer Vishvanath Dalvi. 2020. “New Curcumin-Trimesic Acid Cocrystal and Anti-Invasion Activity of Curcumin Multicomponent Solids against 3D Tumor Models.” International Journal of Pharmaceutics 587 (September). https://doi.org/10.1016/J.IJPHARM.2020.119667

  23. Shaik, Althaf, Nalini Natarajan, Sivapriya Kirubakaran, and Vijay Thiruvenkatam. 2020. “Virtual Screening of FDA Approved Drugs Against Nsp15 Endoribonuclease from SARS CoV-2,” November. https://doi.org/10.26434/CHEMRXIV.13265519.V1

  24. Shaik, Althaf, Parimaladevi Palaniswamy, Vijay Thiruvenkatam, Althaf Shaik, Parimaladevi Palaniswamy, and Vijay Thiruvenkatam. 2021. “Investigating Structural Aspects of Pyridopyrimidinone Derivatives, an Important Precursor in Medicinal Chemistry.” JMoSt 1224 (January): 129040. https://doi.org/10.1016/J.MOLSTRUC.2020.129040

  25. Sharma, Vasudha, and Sharmistha Majumdar. 2020. “Comparative Analysis of ChIP-Exo Peak-Callers: Impact of Data Quality, Read Duplication and Binding Subtypes.” BMC Bioinformatics 2020 21:1 21 (1): 1–14. https://doi.org/10.1186/S12859-020-3403-3

  26. Sharma, Vasudha, Prachi Thakore, and Sharmistha Majumdar. 2020. “THAP9 Transposase Cleaves DNA via Conserved Acidic Residues in an RNaseH-like Domain.” BioRxiv, October, 2020.10.06.328898. https://doi.org/10.1101/2020.10.06.328898

  27. Singh, Udisha, Vinod Morya, Anjali Rajwar, Arun Richard Chandrasekaran, Bhaskar Datta, Chinmay Ghoroi, and Dhiraj Bhatia. 2020. “DNA-Functionalized Nanoparticles for Targeted Biosensing and Biological Applications.” ACS Omega 5 (48): 30767. https://doi.org/10.1021/ACSOMEGA.0C03656

  28. Singhal, Aditi, Kriti Kapil, Ankit Dodla, Sanjay Kumar, and Bhaskar Datta. 2020. “Nucleic Acid Based Nanoconstructs for Environmental Analysis in Atypical Contexts.” Green Energy and Technology, 577–96. https://doi.org/10.1007/978-3-030-33774-2_25

  29. Tarushyam Mukherjee, M Aravintha Siva, Komal Bajaj, Virupakshi Soppina, and Sriram Kanvah. 2020. “Imaging Mitochondria and Plasma Membrane in Live Cells Using Solvatochromic Styrylpyridines.” Journal of Photochemistry and Photobiology. B, Biology 203 (January). https://doi.org/10.1016/J.JPHOTOBIOL.2019.111732

2019

  1. Patlolla, P. R., Desai, N., Gupta, S., & Datta, B. (2019). Interaction of a dimeric carbocyanine dye aggregate with bovine serum albumin in non-aggregated and aggregated forms. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 209, 256–263. https://doi.org/10.1016/j.saa.2018.10.048 

  2. Kumar, S., Krishnakumar, V. G., Morya, V., Gupta, S., & Datta, B. (2019). Nanobiocatalyst facilitated aglycosidic quercetin as a potent inhibitor of tau protein aggregation. International Journal of Biological Macromolecules, 138, 168–180. https://doi.org/10.1016/j.ijbiomac.2019.07.081 

  3. Kumar, S., Morya, V., Gadhavi, J., Vishnoi, A., Singh, J., & Datta, B. (2019). Investigation of nanoparticle immobilized cellulase: nanoparticle identity, linker length and polyphenol hydrolysis. Heliyon, 5(5), e01702. https://doi.org/10.1016/j.heliyon.2019.e01702 

  4. Chilka, P., Desai, N., & Datta, B. (2019). Small Molecule Fluorescent Probes for G- Quadruplex Visualization as Potential Cancer Theranostic Agents. Molecules, 24(4), 752. https://doi.org/10.3390/molecules24040752

  5. Kumar, S., Morya, V., & Datta, B. (2019). Application of Nanobiocatalysts on Food Waste. In Enzymes in Food Biotechnology (pp. 785–793). Elsevier. https://doi.org/10.1016/B978-0-12-813280-7.00045-1 

  6. Yadav, G., Haaland, K. Y., & Mutha, P. K. (2019). Laterality of Damage Influences the Relationship Between Impairment and Arm Use After Stroke. Journal of the International Neuropsychological Society, 25(05), 470–478. https://doi.org/10.1017/S1355617718001261 

  7. Patel, D., Patel, M., Datta, S., & Singh, U. (2019). CGGBP1 regulates CTCF occupancy at repeats. Epigenetics & Chromatin, 12(1), 57. https://doi.org/10.1186/s13072-019-0305-6 

  8. Datta, S., Patel, M., Patel, D., & Singh, U. (2019). Distinct DNA Sequence Preference for Histone Occupancy in Primary and Transformed Cells. Cancer Informatics, 18, 117693511984383. https://doi.org/10.1177/1176935119843835 

  9. Purushothaman, G., Angira, D., & Thiruvenkatam, V. (2019). Investigation of nicotinamide and isonicotinamide derivatives: A quantitative and qualitative structural analysis. Journal of Molecular Structure, 1197, 34–44. https://doi.org/10.1016/j.molstruc.2019.07.033 

  10. Katla, J., Shaik, A., Dahiwadkar, R., Thiruvenkatam, V., & Kanvah, S. (2019). Cover Feature: One‐ and Two‐Component Organogels Containing Cyanostilbene without any Auxiliary Substituents (ChemPlusChem 12/2019). ChemPlusChem, 84(12), 1776–1776. https://doi.org/10.1002/cplu.201900605 

  11. Purushothaman, G., & Thiruvenkatam, V. (2019). High Yield Expression of Recombinant CD151 in E. coli and a Structural Insight into Cholesterol Binding Domain. Molecular Biotechnology, 61(12), 905–915. https://doi.org/10.1007/s12033-019-00212-3 

  12. Dolui, D., Khandelwal, S., Shaik, A., Gaat, D., Thiruvenkatam, V., & Dutta, A. (2019). Enzyme-Inspired Synthetic Proton Relays Generate Fast and Acid-Stable Cobalt-Based H 2 Production Electrocatalysts. ACS Catalysis, 9(11), 10115–10125. https://doi.org/10.1021/acscatal.9b02953 

  13. Shaik, A., Angira, D., & Thiruvenkatam, V. (2019). Insights into supramolecular assembly formation of diethyl aryl amino methylene malonate (DAM) derivatives assisted via non-covalent interactions. Journal of Molecular Structure, 1192, 178–185. https://doi.org/10.1016/j.molstruc.2019.04.114 

  14. Angira, D., Chikhale, R., Mehta, K., Bryce, R. A., & Thiruvenkatam, V. (2019). Tracing the GSAP–APP C-99 Interaction Site in the β-Amyloid Pathway Leading to Alzheimer’s Disease. ACS Chemical Neuroscience, 10(8), 3868–3879. https://doi.org/10.1021/acschemneuro.9b00332 

  15. Shah, C. P., Purushothaman, G., Thiruvenkatam, V., Kirubakaran, S., Juvale, K., & Kharkar, P. S. (2019). Design, synthesis and biological evaluation of Helicobacter pylori inosine 5′-monophosphate dehydrogenase (HpIMPDH) inhibitors. Further optimization of selectivity towards HpIMPDH over human IMPDH2. Bioorganic Chemistry, 87, 753–764. https://doi.org/10.1016/j.bioorg.2019.04.001 

  16. Purushothaman, G., & Thiruvenkatam, V. (2019). High Yield Expression of Recombinant CD151 in E. coli and a Structural Insight into Cholesterol Binding Domain. Molecular Biotechnology, 61(12), 905–915. https://doi.org/10.1007/s12033-019-00212-3 

  17. Katla, J., Shaik, A., Dahiwadkar, R., Thiruvenkatam, V., & Kanvah, S. (2019). One‐ and Two‐Component Organogels Containing Cyanostilbene without any Auxiliary Substituents. ChemPlusChem, 84(12), 1789–1795. https://doi.org/10.1002/cplu.201900564 

  18. Juvale, K., Purushothaman, G., Singh, V., Shaik, A., Ravi, S., Thiruvenkatam, V., & Kirubakaran, S. (2019). Identification of selective inhibitors of Helicobacter pylori IMPDH as a targeted therapy for the infection. Scientific Reports, 9(1), 190. https://doi.org/10.1038/s41598-018-37490-x 

  19. Sahu, N. U., Purushothaman, G., Thiruvenkatam, V., & Kharkar, P. S. (2019). Design, synthesis, and biological evaluation of Helicobacter pylori inosine 5′-monophosphate dehydrogenase ( Hp IMPDH) inhibitors. Drug Development Research, 80(1), 125–132. https://doi.org/10.1002/ddr.21467 

  20. Jangra, S., Purushothaman, G., Juvale, K., Ravi, S., Menon, A., Thiruvenkatam, V., & Kirubakaran, S. (2019). Synthesis and In Vitro Enzymatic Studies of New 3-Aryldiazenyl Indoles as Promising Helicobacter pylori IMPDH Inhibitors. Current Topics in Medicinal Chemistry, 19(5), 376–382. https://doi.org/10.2174/1568026619666190227212334 

 

2018

  1. Panjwani, B., Gupta, S., & Thareja, P. (2018). Ovalbumin at oil–water interfaces: Adsorption and emulsification. Journal of Dispersion Science and Technology, 39(8), 1126–1133. https://doi.org/10.1080/01932691.2017.1384387 

  2. Guru KrishnaKumar, V., Baweja, L., Ralhan, K., & Gupta, S. (2018). Carbamylation promotes amyloidogenesis and induces structural changes in Tau-core hexapeptide fibrils. Biochimica et Biophysica Acta (BBA) - General Subjects, 1862(12), 2590–2604. https://doi.org/10.1016/j.bbagen.2018.07.030 

  3. Idrees, D., Hadianawala, M., Mahapatra, A. das, Datta, B., Roy, S., Ahamad, S., Khan, P., & Imtaiyaz Hassan, Md. (2018). Implication of sulfonylurea derivatives as prospective inhibitors of human carbonic anhydrase II. International Journal of Biological Macromolecules, 115, 961–969. https://doi.org/10.1016/j.ijbiomac.2018.04.131 

  4. Hadianawala, M., Mahapatra, A. das, Yadav, J. K., & Datta, B. (2018). Molecular docking, molecular modeling, and molecular dynamics studies of azaisoflavone as dual COX-2 inhibitors and TP receptor antagonists. Journal of Molecular Modeling, 24(3), 69. https://doi.org/10.1007/s00894-018-3620-0  

  5. Patlolla, P. R., das Mahapatra, A., Mallajosyula, S. S., & Datta, B. (2018). Template-free H-dimer and H-aggregate formation by dimeric carbocyanine dyes. New Journal of Chemistry, 42(9), 6727–6734. https://doi.org/10.1039/C8NJ00371H 

  6. Patel, D., Patel, M., Westermark, B., & Singh, U. (2018). Dynamic bimodal changes in CpG and non-CpG methylation genome-wide upon CGGBP1 loss-of-function. BMC Research Notes, 11(1), 419. https://doi.org/10.1186/s13104-018-3516-1 

  7. Bhoir, S., Shaik, A., Thiruvenkatam, V., & Kirubakaran, S. (2018). High yield bacterial expression, purification and characterisation of bioactive Human Tousled-like Kinase 1B involved in cancer. Scientific Reports, 8(1), 4796. https://doi.org/10.1038/s41598-018-22744-5 

  8. Purushothaman, G., & Thiruvenkatam, V. (2018). Qualitative and quantitative analysis of intermolecular interactions in xanthenedione derivatives. Acta Crystallographica Section C Structural Chemistry, 74(7), 830–838. https://doi.org/10.1107/S205322961800832X 

  9. Angira, D., Shaik, A., Kirubakaran, S., & Thiruvenkatam, V. (2018). Exploring a solvated dimer of Gefitinib: a quantitative analysis. Acta Crystallographica Section C Structural Chemistry, 74(8), 944–950. https://doi.org/10.1107/S2053229618009671